July 15, 2018
The latest version of this document can be found at http://www.ncl.ucar.edu/Download/build_from_src.shtml.
This is an all-encompassing document on:
NCL and NCAR Graphics can only be built on UNIX systems.
We highly recommend that you install NCL via conda or using a precompiled NCL binary, rather than attempting a build from source code.
If you tried a precompiled binary and ran into problems, you can email your problem to the ncl-install email list (you must subscribe first).
If you decide to go forth with building from source code, good luck!
Note on building NCAR Graphics only: you have the option during the build process to indicate you do not want to build NCL, effectively building just NCAR Graphics. This simplifies the build somewhat, since you can get by with not having to install most, if any, of the external software packages listed below. If you are already familiar with building NCAR Graphics from source code, then all the instructions you know from before are the same. When you run "./Configure", be sure to answer "n" when it asks if you want to build NCL.
Before you start building NCL/NCAR Graphics, look over this document to see what functionality you want to include. This will help you figure out what packages you'll need and what options they need to be built with. Check if you already have any of these packages on your system and if they were built with the correct options.
Some of the required software libraries may already be on your system. On Linux and Mac systems, you can use a command called "locate" to look for libraries.
locate libcairo
NCL/NCAR Graphics has been successfully built on 32 and 64 bit Linux systems, Macs (32 or 64 bit) running MacOSX, and Windows running 32-bit Cygwin.
Email ncl-install if you have any problems understanding this document or building any of this software. We've included a troubleshooting section for common problems encountered when building NCL and/or NCAR Graphics.
Note that in the instructions below, "NCL" will sometimes be used to mean both NCL and NCAR Graphics. If something is for NCAR Graphics only, we try to indicate this.
The instructions for building haven't changed much since version 5.2.1. Here's what's new about the source code instructions since version 6.0.0 of NCL:
To build NCL, you need a Fortran compiler that can compile both Fortran 77 and 90, an ANSI C compiler, and a C++ compiler. In general, we recommend using the GNU (gcc, gfortran, and g++) compilers, and using version 7.x or higher. For NCL V6.5.0, NCL was built with the GNU and Intel compilers. In the past we have successfully used gcc, gfortran, g95, Intel Fortran/C, and Portland Group. You cannot use g77 as a Fortran compiler.
Set up environment variables for external software
Most of the external software packages that NCL and NCAR Graphics depend on are configured using a "configure" script. These "configure" scripts recognize a number of standard environment variables that allow you to set compilers and compile options.
Decide what compilers and compile options you want to use, and then set the following environment variables as appropriate:
Environment variable name | Description | Example |
---|---|---|
CC | C compiler | bash/ksh: export CC=gcc csh/tcsh: setenv CC gcc |
CFLAGS | C compile flags | bash/ksh: export CFLAGS='-O -ansi -std=c99 -fopenmp -fPIC' export CFLAGS='-O -m64 -ansi -std=c99 -fopenmp -fPIC' csh/tcsh: setenv CFLAGS '-O -ansi -std=c99 -fopenmp -fPIC' setenv CFLAGS '-O -m64 -std=c99 -ansi -fopenmp -fPIC' |
FC | Fortran compiler | bash/ksh: export FC=gfortran csh/tcsh: setenv FC gfortran |
FFLAGS | Fortran compile flags | bash/ksh: export FFLAGS='-fPIC -fopenmp' csh/tcsh: setenv FFLAGS '-fPIC -fopenmp' |
F90 | Fortran 90 compiler | bash/ksh: export FC=gfortran csh/tcsh: setenv FC gfortran |
F90FLAGS | Fortran 90 compile flags | bash/ksh: export F90FLAGS='-fPIC -fopenmp' export F90FLAGS='-m64 -fPIC -fopenmp' csh/tcsh: setenv F90FLAGS '-fPIC -fopenmp' setenv F90FLAGS '-m64 -fPIC -fopenmp' |
CXX | C++ compiler | bash/ksh: export CXX=g++ csh/tcsh: setenv CXX g++ |
CXXFLAGS | C++ compile flags | bash/ksh: export CXXFLAGS='-O -ansi -std=c99 -fopenmp -fPIC' export CXXFLAGS='-O -m64 -ansi -fopenmp -fPIC' csh/tcsh: setenv CXXFLAGS '-O -ansi -std=c99 -fopenmp -fPIC' setenv CXXFLAGS '-O -m64 -ansi -std=c99 -fopenmp -fPIC' |
CPPFLAGS | preprocessor compile flags | bash/ksh: export CPPFLAGS='-DNDEBUG' csh/tcsh: setenv CXXFLAGS '-DNDEBUG' |
In order to build some of the X applications that are part of NCL (like idt), you must have some of the X11 developer's libraries installed on your system. At a minimum, you should have the following libraries (and associated include files) installed on your system: X11, Xaw, Xext, Xm, Xmu, Xt.
These libraries are usually installed as part of an X developer's package, and will reside in a directory like /usr/lib, /usr/lib64, /usr/X11R6/lib, or /usr/X11R6/lib64.
For Linux systems, you can get these libraries using a command like one of the following:
sudo apt-get install x11-dev sudo apt-get install xorg-dev sudo apt-get install libx11-dev yum install libx11-devel
The software listed below is not optional if you plan to build NCL. If you are building NCAR Graphics only, then read the blurb next to each software package name to see if it is needed.
Once you download and install any external software to use with NCL, you must comply with the license of that software, regardless of what NCL's license is.
Note: it makes things easier if you install all of the external software needed (with the exception of the X11 libraries and X11 include files) to the same parent directory. This will be important later when you have to tell the NCL build system where all the external software has been installed.
We will use /usr/local in all of our examples below for installing external software. You may need to be "root" in order to have permission to install software to /usr/local. If you don't have the "root" password, then you may want to use a directory other than /usr/local, like a directory under your home directory.
You may not need to install all of this software from source code! If you are on a Linux system, you might be able to use "yum" or "apt-get" to download the desired software. On Macs, you might be able to use MacPorts. Under Cygwin, the "setup.exe" program can be used.
Each package is listed below, along with the version we used to build NCL V6.5.0 on our own systems. In most cases you don't need to have the exact version of the software we used, but it's a good idea to match them as much as possible. We've included the "wget" command we used for the retrieving the source code, where applicable.
Download version 9b
wget http://www.ijg.org/files/jpegsr9b.zip
Once you have the jpeg source code, you can build and install it with:
./configure --disable-shared --prefix=/usr/local make all installYou may additionally need do this to install the libraries and include files:
make install-lib make install-headers
Download version 1.2.11 or later.
wget https://zlib.net/zlib-1.2.11.tar.gz
Once you have the zlib source code, you can build and install it with:
./configure --prefix=/usr/local --static make all install
Cairo and its supplemental packages may already be on your system (Linux, MacOSX, and Cygwin), so check this before you start building them.
You can also install many of these packages on Linux systems using a package installer like yum apt-get, or YaST, and on a Mac system using MacPorts. The package(s) to install have names like "libcairo-devel", "libpixman-devel", etc. It is very likely that once you install "libcairo-devel", the other packages will get installed automatically, so check for this before you install all the packages.
Download version 1.6.x (not 1.4.x or 1.5.x). Version 1.2 will work as well, but we don't recommend this version.
wget http://prdownloads.sourceforge.net/libpng/libpng-1.6.34.tar.gz
Once you have the libpng source code, you can build and install it with:
./configure --with-pic --disable-shared --prefix=/usr/local make all install
wget http://pkgconfig.freedesktop.org/releases/pkg-config-0.29.tar.gz
Once you have the pkg-config source code, you can build and install it with:
./configure --prefix=/usr/local make all install
Make sure that the location of pkg-config is on your search path and library path. For example, if you installed pkg-config to "/usr/local", then you also need to do the following:
From tcsh or csh:
setenv PKG_CONFIG_PATH /usr/local/lib/pkgconfig set path=(/usr/local/bin $path)
From ksh or bash:
export PKG_CONFIG_PATH=/usr/local/lib/pkgconfig export PATH=/usr/local/bin:$PATH
[On a Mac, use DYLD_LIBRARY_PATH instead of LD_LIBRARY_PATH.]
wget https://sourceforge.net/projects/freetype/files/freetype2/2.9.1/freetype-2.9.1.tar.gz
Once you have the FreeType source code, you can build and install it with:
./configure --prefix=/usr/local --disable-shared make all install
wget https://www.cairographics.org/releases/LATEST-pixman-0.34.0
Once you have the pixman source code, you can build and install it with:
Macs:
./configure --prefix=/usr/local --disable-openmp --disable-arm-iwmmxt \ --disable-dependency-tracking make all install
Linux, MacOS, others:
./configure --prefix=/usr/local make all install
wget http://cairographics.org/releases/cairo-1.14.12.tar.xz
You can't build cairo until you have installed FreeType, pixman, and pkg-config.
Make sure the "pkg-config" you built is on your search path. For example, if you installed it to /usr/local, then /usr/local/bin needs to be in your search path.
From tcsh or csh:
setenv PATH /usr/local/bin:$PATH which pkg-config
From ksh or bash:
export PATH=/usr/local/bin:$PATH which pkg-configOnce you have the cairo source code, you can build and install it with:
./configure --prefix=/usr/local --enable-quartz-font=no --enable-quartz=no \ --enable-shared=no --enable-static=yes make all install
Download version 4.6.1.
Note that
NetCDF versions 4.1.x and later support OPenDAP, and this is built in by default. NetCDF 4.1.x also includes the UDUNITS-2 software, but the stand-alone UDUNITS-2 library is more up-to-date so we recommend this over the one that comes with NetCDF. See instructions on building and installing UDUNITS-2.
This software can be built different ways: with or without "classic" NetCDF-4 support, and with or without OPeNDAP support. Classic NetCDF-4 support gives you file compression capabilities. Full NetCDF-4 support gives you groups, unlimited dimensions, file compression, and compound structures. OPeNDAP support allows you to read NetCDF files served on the web by OPeNDAP servers. We recommend building with at least classic NetCDF-4 support turned on. The instructions below show methods for building classic NetCDF-4 without OPenDAP support, and classic NetCDF-4 with OPenDAP support.
The NetCDF website has up-to-date intructions for building this software, so we recommend you visit their Getting and building NetCDF page. In particular, you can look at these two methods for building NetCDF:
The above links include information about where to get the additional software required. We've provided these links below for convenience:
The szip 2.x software is available from same page where you download HDF-5. Use this version, rather than the one on the official szip page.
./configure --prefix=/usr/local --enable-netcdf-4 --disable-shared make all install
wget https://support.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.10.1.tar.gz
./configure --with-zlib=/usr/local --with-szlib=/usr/local --prefix=/usr/local make all install >& make-output
wget https://curl.haxx.se/download/curl-7.60.0.tar.gz
Download version 7.60.x or later. Once you have the source code, you can build and install it with:
./configure --prefix=/usr/local --with-zlib=/usr/local --with-pic make all install >& make-output
Download version 4.2.x or later. (HDF version 5.x.y is a different software package).
wget https://support.hdfgroup.org/ftp/HDF/HDF_Current/src/hdf-4.2.13.tar
Note: As of NCL V6.2.0, you no longer need to install the HDF include files to a special directory (in older versions you had to use a special "--includedir" option).
Build and install HDF-4 with:
./configure --prefix=/usr/local --with-zlib=/usr/local \ --with-jpeg=/usr/local --disable-netcdf make all installNote: if you are having problems with "make", one user reported that he used "gmake" instead.
The paths used for the "--with-zlib" and "--with-jpeg" options must be set to whatever you used above for these two software packages. If you choose to build HDF-4 with the szip compression library, be sure to add "--with-szip=/usr/local" (or whatever location you used when building it) to the configuration process.
Again, as with the above section, it makes things easier if you install all of the external software needed to the same parent directory. We will use /usr/local in all of our examples below for installing external software.
GRIB2 software - not needed if you are only doing an NCAR Graphics build.
If you need support for reading GRIB2 files, then you will need to download and install the following packages.
Once you have the Jasper source code, you can build and install it with:
./configure --prefix=/usr/local make all install
wget http://www.ncl.ucar.edu/Download/files/g2clib-1.6.0-patch.tar.gz
Once you have this modified g2clib source code, make changes to "makefile" to:
Now type:
make all mv libgrib2c.a /usr/local/lib cp grib2.h /usr/local/include
GDAL/PROJ.4 software - not needed if you are only doing an NCAR Graphics build.
If you need support for reading shapefile, mapinfo, TIGER, etc, file formats, then you will need to download and install the following two packages.
wget http://download.osgeo.org/proj/proj-5.1.0.tar.gz
Once you have the PROJ.4 source code, you can build and install it with:
./configure --prefix=/usr/local --enable-static=yes --enable-shared=no make all install
wget http://download.osgeo.org/gdal/2.2.4/gdal-2.2.4.tar.gz
Important note about GDAL: this software contains its own versions of the GRIB2 library (g2clib) and the HDF4/HDF5 libraries. It's important that you do NOT compile these versions of the libraries, but rather the ones as instructed elsewhere on this page. To turn off the build of these libraries inside of the GDAL software requires including several "--without-xxxx" options:
./configure --with-static-proj4=/usr/local --prefix=/usr/local --without-pam --with-png=/usr/local --with-gif=internal --with-libtiff=internal --with-geotiff=internal --with-jpeg=/usr/local --with-libz=/usr/local --with-sqlite3=no --with-expat=no --with-curl=no --without-ld-shared --with-hdf4=no --with-hdf5=no --with-pg=no --without-grib --disable-shared --with-freexl=no --with-geos=no --with-openjpeg=no --with-mysql=no --with-ecw=no --with-fgdb=no --with-odbc=no --with-xml2=no --with-ogdi=no --with-pcraster=no --with-xerces=no make all install
HDF-EOS 2 software - not needed if you are only doing an NCAR Graphics build.
wget ftp://edhs1.gsfc.nasa.gov/edhs/hdfeos/latest_release/HDF-EOS2.20v1.00.tar.Z
If you need support for reading HDF-EOS 2 files, then you will need to download and install the following packages:
Once you have the HDF-EOS 2 source code, you can build and install it with:
./configure CC=/usr/local/bin/h4cc --with-hdf4=/usr/local --with-zlib=/usr/local --with-jpeg=/usr/local --prefix=/usr/local
wget ftp://edhs1.gsfc.nasa.gov/edhs/hdfeos5/latest_release/HDF-EOS5.1.16.tar.Z
If you need support for reading HDF-EOS 5 files, then you will need to download and install the following packages:
Once you have the HDF-EOS 5 source code, you can build and install it with:
./configure CC=/usr/local/bin/h5cc --with-hdf5=/usr/local --with-zlib=/usr/local --with-szlib=/usr/local --prefix=/usr/local make all install
Note that if you have settings in your CFLAGS, you can include these by enclosing them with '':
./configure CC=/usr/local/bin/h5cc --with-hdf5=/usr/local --with-zlib=/usr/local --with-szlib=/usr/local --prefix=/usr/local make all install
You may also have to hand-copy two include files:
cp include/HE5_GctpFunc.h include/HE5_HdfEosDef.h /usr/local/include/.
Triangle software - not needed if you are only doing an NCAR Graphics build.
If you need to use the Triangle code (for generating triangular meshes that you can contour), then you will need to download the source code, and copy over only the files "triangle.c" and "triangle.h" to the $NCL/ni/src/lib/hlu directory in the NCL source tree (you may not have downloaded the NCL source code yet, so wait until you get to this part to copy over the two files).
Note that Triangle has a more restrictive license than NCL's license which disallows you from selling any source code or product that contains Triangle. If you build NCL with Triangle included, you will be bound by Triangle's license.
UDUNITS-2 (2.2.26) - not needed if you are only doing an NCAR Graphics build.
Download the Udunits 2.x (not 1.x!) source code.
wget ftp://ftp.unidata.ucar.edu/pub/udunits/udunits-2.2.26.tar.gz
If you need the conversion functions ut_calendar and ut_inv_calendar, then you need to install UDUNITS-2.
Once you have the source code, you can build and install it with:
setenv PERL "" # export PERL="" ./configure --prefix=/usr/local make all install >& make-outputSetting the PERL environment variable to an empty string prevents the perl interface from being built, which is not needed for NCL.
Vis5D+ software (1.3.0-beta) - not needed if you are only doing an NCAR Graphics build.
If you need to use any of the v5d_xxx functions (see the "V" section of the NCL function list), then you need to install Vis5d+.
Download the vis5d+ source code. We used 1.3.0-beta. Once you have the source code, you can build and install it with:
./configure --prefix=/usr/local --with-netcdf=/usr/local/lib/libnetcdf.a make all install >& make-output
To download the NCL source code, follow the instructions at the URL:
http://www.ncl.ucar.edu/Download/
The NCL source code you download will be a single compressed tar file (we'll call it "ncl_ncarg-6.5.0.tar.gz"). Move the "ncl_ncarg-6.5.0.tar.gz" file to a temporary directory where you have plenty of disk space (around 850 megabytes to hold all of the source code, object files, binaries, and so on). Then, uncompress and untar the file as follows:
tar -zxvf ncl_ncarg-6.5.0.tar.gzThe above steps will create a directory called "ncl_ncarg-6.5.0". For convenience, we'll use the notation $NCARG to mean the top level of the NCL/NCAR Graphics source tree. Set the environment variable NCARG to the full path of this directory. For example, if you untarred the files from the directory /usr/local/src, then you would do one of the following: From tcsh or csh:
setenv NCARG /usr/local/src/ncl_ncarg-6.5.0From ksh or bash:
export NCARG=/usr/local/src/ncl_ncarg-6.5.0sh:
NCARG=/usr/local/src/ncl_ncarg-6.5.0 export NCARG
Be sure to see the troubleshooting section below for any known problems or tips.
Before you try to build NCL, you need to quickly check if your system will be recognized by the NCL build environment. Type:
cd $NCARG/config make -f Makefile.ini ./ymake -config `pwd`(Note that the ticks around "pwd" are back ticks.)
If no output is echoed to the screen, then this means your system is recognized by the NCL build environment. Go to the very next section, "Get name of configuration file."
If, however, you get a message:
ymake: system unknownthen go to Appendix A for information on modifying some files in the $NCARG/config directory so they recognize your system. Then you can come back to this section.
If no output is echoed to the screen from the "ymake" command in the previous section, then this most likely means that the NCL build environment recognizes your system. Just to be certain, you can check the name of the configuration file that the NCL build is going to use by typing (in the same directory):
grep SYSTEM_INCLUDE MakefileThis should echo something like:
SYSTEM_INCLUDE = "Darwin"which means "Darwin" is the name of the configuration file it will use in the $NCARG/config directory.
Now that you have the name of the configuration file that's going to be used in the "$NCARG/config" directory, you may need to edit this file and make changes to it. The "README" in the same directory has a description of some available configuration files that you can copy from.
When modifying your configuration file, pay particular attention to how the following macros are being set:
CCompiler | The C compiler |
FCompiler | The Fortran compiler |
CcOptions | C compiler options (besides the optimize flag) |
FcOptions | Fortran compiler options (besides the optimize flag) |
COptimizeFlag | C optimize flag(s) (the default is "-O") |
FOptimizeFlag | Fortran optimize flag(s) (the default is "-O") |
ExtraSysLibraries | Extra system libraries that might be needed to get executables to link |
CtoFLibraries | Extra Fortran libraries that might be needed to get executables to link ("-lgfortran" is one example, if you are using the gfortran Fortran compiler) |
NgCallF | The macro for handling how Fortran routine names are named in the library. |
If you don't see these macros being defined in your system configuration file, then that means that the default value, which is defined in the $NCARG/config/Template file, is being used. To change the default, just add it to your system configuration file with the new value.
For example, on LINUX systems, the default C and Fortran compilers are "gcc" and "gfortran". If you want to change this to "icc" and "ifort", then modify the file $NCARG/config/LINUX, and add the line:
#define CCompiler icc #define FCompiler ifortalong with the other macro definitions.
In order to build NCL from source, you must have a Fortran compiler that can compile both Fortran 77 and 90 code, and an ANSI C compiler.
Here are the general steps for building NCL from source:
Before you build and install NCL, you need to run a script called "Configure" to answer several questions about where you want the software installed, what optional software you want to include, and the location of the optional software.
Enter the following commands to run this script:
cd $NCARG ./Configure -vIf Configure doesn't recognize your system, it will quit right away with an error message. Otherwise, it will start asking you several questions.
If it quits with an error message that indicates it doesn't recognize your system, then read and follow the instructions in the section on Test if your system is recognized by the NCL build environment before running Configure again.
If Configure does recognize your system, then answer all of the questions about where you want the software installed, whether you want support for HDF4-EOS, HDF5-EOS, cairo, etc, and so on.
One of the final questions is to list the paths to your local libraries and include files. It's important to include the paths to the external software you want support for, like cairo, HDF-EOS5, GRIB2, etc.
Be sure to include the path to the freetype include files, which will be in a directory like "/usr/local/include/freetype2".
Once you have finished running Configure, you should get a message indicating that the configuration process is complete, and that you can start building and installing the software. First verify that you have the correct compilers, options, and paths by typing:
make InfoIf everything looks okay, then you can skip the next few sections and go directly to "Start the build and install process."
If the installation paths look wrong, then rerun Configure and reenter the installation paths.
If something else looks wrong, like the name of the compilers or the compiler options listed, then go back to the section "Modify system configuration file to change default values", or read the next few sections on notes for specific systems.
Special note for Linux systems
The default configuration file for Linux is "LINUX". You need to edit this file for i386, i686, x86_64, and ia64 systems. There are several LINUX.xxxx sample configuration files to help you modify this file for your purpose. Also, see the "README" file in the "config" directory for more information.
If you are using the "gcc" and "gfortran" compilers to build NCL, then you will need to include something like:
#define CtoFLibraries -lgfortranin the $NCARG/config/LINUX file. You may also need to indicate the path to the gfortran library with the -L option:
#define CtoFLibraries -L/usr/local/lib -lgfortran"/usr/local/lib" is just an example. You will need to find "libgfortran.so" or "libgfortran.a" on your system and use this path.
If you are using "gcc" and "g95" to compile NCL, then you need to do the same thing, except use "-lf95" in place of "-lgfortran". Ditto for if you are using the Intel compilers "icc" and "ifort", you may need "-lifcore".
Special note for MacOSX systems
The default file for an Intel MacOSX system is "Darwin_Intel". If "uname -m" reports "i386" or "x86_64" on your system, then this is the file you want to modify.
The default configuration file for a PPC MacOSX system is "Darwin". If "uname -m" reports "Power Macintosh", then this is the file you want to modify.
There are are other Darwin.xxxx and Darwin_Intel.xxxx sample configuration files. You can use any one of these to help you modify Darwin or Darwin_Intel for your purpose.
If you have an Intel Mac running MacOS 10.6 or later, then your Mac is probably 64-bit, and you need to copy the "Darwin_Intel.64" file to "Darwin_Intel" and modify it as necessary.
To build NCL on an MacOSX system, you must first install a few supplemental packages:
This is usually available on one of the installer CDs that came with your Mac. Or, if you have a "/Developers/Tools" directory, cd to that directory and search for a PDF file that will contain instructions on how to install the Developer's Tools.
If you don't have the directory or the CD, you can get this software from the http://connect.apple.com site. (You may need to create an account with them first.) Once you are logged in, click on "Download Software", and then "Mac OS X". You should then see a link for downloading the Developer's Tools.
MacPorts supplies a program called "port", which is a highly useful application for easily downloading software for Macs. (See next section on how to install gfortran.)
If you don't have a Fortran compiler, then you can try using the MacPorts command "port" to get one. Type something like:
port install gfortranIf this fails, you can use the "list" command to see what gfortran packages are available:
port list gfortran
If "port" doesn't work, then you can download and install precompiled MacOSX compilers from the HPC website, the gcc/gfortran binaries wiki or the g95 website.
An X11 server will enable you to display NCL graphical output to your screen. We recommend that you use Apple's X11 server, which should already be installed on your Mac, or may be available on one of your installation CDs.
Be sure to see the "Running NCL under MacOSX" document for more notes.
Special note for Windows systems
Before you can build any software on a Windows system running Cygwin, you need to install a number of software packages via the "setup-x86.exe" X/Cygwin program. See the "Installing NCL under Windows/Cygwin/X" page for a full description of what you need and how to download it.
cd $NCARG make Everything >& make-output &Be patient; this can take from thirty minutes to a few hours depending on your machine and its current load. During the installation, you may examine the contents of the make-output file with the command:
tail -f make-outputIf you encounter errors during the build process, you can restart without losing any of the work already accomplished. Refer to the section "Restarting the installation" for details about recovering from errors that occur during installation.
If it looks like not all the files were installed, then take a look at the make-output file, and check for words like "fatal" or "error". Don't worry too much about warnings, unless they are followed by errors.
If you find an error, try to determine the nature of the error, make any necessary adjustments, and either start the build from scratch or from where it left off.
If the nature of the error appears to be something like an option not being included on every compile line, then you need to change the system configuration file in $NCARG/config, add the necessary option(s), and restart the build from scratch (using a different output file):
cd $NCARG make Everything >& make-output.2If the nature of the error is such that you just need to tweak a particular file or Makefile somewhere in the NCL/NCARG Graphics source tree, then cd to the problem directory, make the change, and then type the following to recompile the local change (to make sure your change was successful) and start the build from where it left off:
make me make includes depend all install cd $NCARG make all install >>& make-outputSee Appendix B for more information on editing configuration files and restarting the installation.
Here's an example (using csh) that assumes you installed everything to the parent directory /usr/local:
setenv NCARG_ROOT /usr/localHere's an example for bash or ksh:
setenv PATH $NCARG_ROOT/bin:$PATH
setenv MANPATH $NCARG_ROOT/man:$MANPATH
export NCARG_ROOT=/usr/local
export PATH=$NCARG_ROOT/bin:$PATH
export MANPATH=$NCARG_ROOT/man:$MANPATH
ncl -V ng4ex gsun01nThe ng4ex command will copy an NCL script called gsun01n.ncl into your current working directory, and run it with NCL. An X11 window should pop up with an XY plot drawn on it. Click on this plot with your left mouse button to keep advancing to the next frame.
Once this file is in your directory, you can also run it yourself with:
ncl gsun01n.nclIf "ncl" seems to be working, then this indicates that your build of NCAR Graphics was at least mostly successful, since NCL depends on the NCAR Graphics libraries.
To test NCAR Graphics only, there's an extensive suite of examples available. You should refer to the NCAR Graphics Fundamentals. It will show you how to run examples and test programs, and how to view the resulting graphics. Using the ncargex and ctrans programs is the easiest way to test the installation and become familiar with the use of NCAR Graphics.
For a quick test, try the following:
ncargex cpex08 ctrans -d X11 cpex08.ncgmThe first command will copy a file called cpex08.f into your current working directory, compile, link, and execute it, and create a graphics file called cpex08.ncgm. The second command will display the graphic on an X11 window on your screen. You must have your DISPLAY environment variable set correctly for this command to work. Left-click on the X11 window to make the graphic go away.
If you still want to try the icc/ifort compilers, and "icc" can't find the "ifcore" library, then you may need to include a "-L" option that includes the path to this library in your configuration file in $NCARG/config.
For example, if you are on a LINUX system and "libifcore.{a.so}" is in /opt/intel/fc/10.1.013/lib, then edit $NCARG/config/LINUX and change the CtoFLibraries line to have:
#define CtoFLibraries -lm -L/opt/intel/fc/10.1.013/lib -lifcore
cp lex.yy.c scanner.c gcc -ansi -g -I../../.././include -I/Users/fredclare/include -I/ Users/fredclare/include/hdf -I/usr/X11R6/include -I/sw/include -I/usr/ X11R6/include/X11 -DDarwin -DMAJOR=9 -DSYSV -D_POSIX_SOURCE - D_XOPEN_SOURCE -DByteSwapped -DNeedFuncProto -c -o scanner.o scanner.c lex.yy.c: In function ~Qyy_get_next_buffer~R: lex.yy.c:2099: error: ~Qyy_current_buffer~R undeclared (first use in this function) lex.yy.c:2099: error: (Each undeclared identifier is reported only once lex.yy.c:2099: error: for each function it appears in.) make: *** [scanner.o] Error 1then your problem may be with flex. You can try our version of flex. Download the flex.tar.gz file, and then do the following to build a new flex:
gzcat flex.tar.gz | tar -xf - cd flex-2.5.3 ./configureThis should create a "flex" executable. Move this executable to somewhere that's on your search path already (like maybe $NCARG_ROOT/bin). Make sure that you are getting this flex and not the system one by typing:
rehash which flexA user reported that he had trouble compiling flex with "gcc -O2", but that it worked with the Intel "icc" compiler, using "icc -O0 -g". He didn't try "gcc -O0", which you may want to try if flex is core dumping.
Now, you can test if the "ncl" executable will build:
cd $NCARG/ni/src/ncl make clean includes depend all installIf the file "ncl" builds, then you can start your build from where it left off with:
cd $NCARG make all install >>& make-output &Of course, you can send the output from "make" to whatever file you like.
/usr/local/ncarg/lib/libncarg_gks.a(gziqwk.o): In function `gziqwk_': gziqwk.f:(.text+0x187): undefined reference to `ggkwdr_' /usr/local/ncarg/lib/libncarg_gks.a(gztowk.o): In function `gztowk_': gztowk.f:(.text+0x295): undefined reference to `ggkwdr_' gztowk.f:(.text+0x7d7): undefined reference to `ggkwdr_' gztowk.f:(.text+0xc30): undefined reference to `ggkwdr_'then try this:
cd $NCARG/ncarg2d/src/libncarg_gks rm awi/ggkwdr_stub.o make all install
-D__UNIXOS2__(those are two double underscores on the front and the end) to the "StdDefines" line in your configuration file in $NCARG/config (most likely the LINUX or one of the Darwin files in that directory), and rerun "make Everything".
The three steps you'll need to follow before building NCL on an unsupported system are:
1. Modify the "ymake" file to recognize your system
For the first step, modify the file $NCARG/config/ymake and go to the lines that read:
# Figure out what kind of system we are on. We need to know the OS # and the machine architecture.Notice that the UNIX command "uname" is used to determine the architecture type and operating system name. Once you figure out what the various options that uname reports on your system, add your machine architecture and operating system names to the case statements that follow in the same manner as the other systems are done. You also need to come up with a name for your configuration file. This is the value you'll give to the "sysincs" variable. An example will be provided below after step 2.
2. Set up a configuration file
For the second step, cd to $NCARG/config and prepare a configuration file for your system that has the same name you used for the "sysincs" variable in the ymake file. Use one of the existing configuration files as a foundation (for example, "Sun4Solaris"). You will notice several macros being defined in the configuration file. You only need to define a macro if you want it to be something different than what is defined in the "Template" file. The Template file is where all the default values are set. For example, the default Fortran compiler is set to "f77" in the Template file. If your Fortran compiler is called "gfortran", then you would add the following line to your configuration file:
#define FCompiler gfortranTo see what other macros are available and what the default values are set to, see the Template file. In particular, you may need to change the following macros:
CCompiler FCompiler ExtraSysLibraries CcOptions FcOptions NgCallF
Example on how to modify ymake file and set up configuration file
As an example for the first two steps, suppose you are trying to build a configuration file for a Koblinsky Systems Inc. SlothStation running ChaOS version 5.4. Assume that the command "uname -s" returns "ChaOS" and that "uname -m" returns "Sloth999". Modify the file $NCARG/config/ymake and add:
case ChaOS:right after the first occurrence of the statement:
switch ("$foo")You should now see something like:
switch ("$foo") case ChaOS: case SunOS: case AIX: ...Then, after the first occurrence of the statement:
switch("$opsys")add the lines:
case ChaOS: set os = $opsys set arch = $mach set sysincs = Sloth set vendor = Koblinsky breakswand after the second occurrence add:
case ChaOS:where appropriate to get the correct major and minor operating system version numbers defined.
Let's further assume that this system is similar to a Sun workstation running Solaris, so use the Sun4Solaris configuration file as a foundation:
cd $NCARG/config cp Sun4Solaris SlothThe file name "Sloth" is used because this is the value we gave to the "sysincs" variable above. Make any obvious changes to the file "Sloth". As mentioned above, you may need to change the following macros:
CCompiler FCompiler ExtraSysLibraries CcOptions FcOptions NgCallFOf particular note is the "NgCallF" macro. First, a little background: the NCL code is predominantly Fortran code, but the Fortran code relies on a number of C support routines. Since not all systems support the same calling conventions (for example, some systems require an underscore after a Fortran routine name, while others require the name to be in uppercase), the installation system is programmed to apply the macro "NgCallF" to all Fortran-called C code.
The default value of this macro handles the case where an underscore is appended after the Fortran routine name, so you won't need to define this macro if this is the behavior of your compiler. If, however, your compiler does not append an underscore (the IBM xlf/xlf90 compilers are two such examples), then you need to set this macro as follows:
NgCallF regIf your compiler converts the Fortran routine name to uppercase (this is the case with old Cray and the Absoft ProFortran compilers), then you need to set the macro to:
NgCallF caps
3. Modify machine-dependent routines
There are some machine dependent routines that you may need to modify to indicate things like the standard input/output units, the number of bits per integer, the smallest positive magnitude, and so on. All of these machine-dependent requirements have been isolated in several subroutines and it may be necessary to modify these subroutines before building the software.
The routines in question are:
GBYTES ISHIFT G01MIO I1MACH IAND R1MACH IOR SBYTESThese routines are referred to as "low-level support routines" in the remainder of this section. Complete functional descriptions for these routines appear in the section "Machine-dependent support routines". Examples of implementations of all of these subroutines except G01MIO are given in the directory:
$NCARG/common/src/libncarg_cA Fortran implementation of the support routine G01MIO is contained in the directory:
$NCARG/ncarg2d/src/libncarg_gks/bwiG01MIO is the basic I/O routine for NCAR's GKS package, and it is not used anywhere else but in that package.
The subroutines in the above two directories are examples only. These examples may help you, and some may actually run on your machine, but care must be taken to ensure that the implemented routines satisfy the functional descriptions as given in the "Machine-dependent support routines" section. Some of the examples given are coded in C.
There is source code for creating an executable for testing implementations of the low-level routines in the directory:
$NCARG/ncarg2d/src/bin/impltestThe source in this directory may require changes only when moving to a machine with a word size other than 32 or 64.
This directory contains a program called "tlocal" that can be used to test the implementations of IOR, IAND, ISHIFT, GBYTES, and SBYTES. Read the prologue documentation in the code for tlocal for implementation instructions. Success or failure messages will be issued to Fortran unit 6. There are no tests for I1MACH and R1MACH, but the success of the tlocal test depends on proper implementation of I1MACH and R1MACH. Constants for I1MACH and R1MACH for a large number of computers appear in the comment cards of I1MACH and R1MACH. If constants for your host computer appear there, simply uncomment the appropriate cards for your implementation of I1MACH and R1MACH. Otherwise be very careful to implement I1MACH and R1MACH correctly since there is no test for them. The support routine G01MIO is used only by NCAR's GKS package, and no test for it is provided in tlocal.
Since many of the low-level support routines are executed frequently throughout the package, efficient versions are desirable. There are portable Fortran versions of GBYTES and SBYTES in the directory:
$NCARG/common/src/libncarg_cbut they run very slowly. GBYTES and SBYTES are used primarily in the NCGM translator; machine-language versions of these routines could greatly speed up the translator. Machine-language versions of IAND, IOR, and ISHIFT are also desirable.
Configuration files reside in the directory $NCARG/config. They have names like "LINUX" and "Darwin_Intel" to indicate the machine on which they operate. For example, If you are on any kind of system running LINUX, you should make changes to the file $NCARG/config/LINUX. See the "README" file in this directory for more information about the various configuration files.
A few of the macros are quite likely to change from system to system, but most are not. The Configure script allows the installer to make some of these minor changes to the configuration file without editing it. You must be running csh in order to run Configure.
Everything = (Makefiles, clean, all, install) All = (Makefiles, all, install) all = (compile and build libraries) install = (move objects to destinations) clean = (remove object files, core dumps, etc.)If a compilation fails halfway through the install process and you have already created the Makefiles, cleaned out old object code, and compiled a large number of files, you may first correct the problem and then restart the install process. To correct the problem, you need to first look carefully at the error message in the make-output file. By looking at the last several lines of the make-output file, you should be able to determine which directory the make stopped in. For example, let's say see the following in your make-output file:
... Making ./ncarview/src/lib/libncarg_ras cc -Xc -O -I../../../.././include -I/usr/openwin/include -I/usr/dt/include -DBuildRasterHDF -DSUN -DBuildRasterHPPCL -DBuildRasterNrif -DBuildRasterSun -DBuildRasterXWD -DBuildRasterAVS -DBuildRasterSGI -DBuildRasterAbekas -DBuildRasterBinary -DBuildRasterYUV -DNGTMPDIR='"tmp"' -Dsun4 -DSUN -DSYSV -D_XOPEN_SOURCE -D_XOPEN_SOURCE_EXTENDED=1 -D__EXTENSIONS__ -DNeedFuncProto -c raster.c cc -Xc -O -I../../../.././include -I/usr/openwin/include -I/usr/dt/include -DBuildRasterHDF -DSUN -DBuildRasterHPPCL -DBuildRasterNrif -DBuildRasterSun -DBuildRasterXWD -DBuildRasterAVS -DBuildRasterSGI -DBuildRasterAbekas -DBuildRasterBinary -DBuildRasterYUV -DNGTMPDIR='"tmp"' -Dsun4 -DSUN -DSYSV -D_XOPEN_SOURCE -D_XOPEN_SOURCE_EXTENDED=1 -D__EXTENSIONS__ -DNeedFuncProto -c hdf.c "hdf.c", line 44: cannot find include file: <hdf/hdf.h> "hdf.c", line 45: cannot find include file: <hdf/dfgr.h> "hdf.c", line 192: cannot recover from previous errors cc: acomp failed for hdf.c *** Error code 2 make: Fatal error: Command failed for target `hdf.o'You can see from the:
Making ./ncarview/src/lib/libncarg_rasline that the make bombed in the directory "ncarview/src/lib/libncarg_ras". The error message here indicates that it can't find the HDF include files. To fix this problem, then, you would need to do one of three things:
cd $NCARG make all install >& make-output &In our example above with the HDF software, the fix involved something that would affect the Makefiles. In this case, then, you need to regenerate the Makefiles. To do this, type:
cd $NCARG make All >& make-output &
A file named yMakefile exists in each directory and is converted to a regular Makefile using the C preprocessor and a collection of general and system-specific macros. The ymake system resides in $NCARG/config. This allows the redundant information in each Makefile to be isolated, in addition to providing Makefile conditionals. The C preprocessor knows what system it is running on. (The same technique is being employed in other systems, including MIT's X Window System.) If you need to change a Makefile, implement the changes in the yMakefile and then type:
make meIf you completely destroy a Makefile, you can usually recover by typing:
$NCARG/config/ymkmfThere is more information about ymake in the ymake man page which resides in the directory $NCARG/config.
FUNCTION I1MACH(I)
This function is used to set up 16 machine constants.
I1MACH(1) = the standard input unitAssume that integers are represented in the S-digit, base-A form:
I1MACH(2) = the standard output unit
I1MACH(3) = the standard punch unit
I1MACH(4) = the standard error message unit
I1MACH(5) = the number of bits per integer storage unit
I1MACH(6) = the number of characters per integer storage unit
SIGN*(X(S-1)*A**(S-1)+...+X(1)*A+X(0))in which 0 .LT. X(I) .LT. A for I=0,...,S-1.
I1MACH(7) = A, the baseAssume that floating-point numbers are represented in the T-digit, base-B form:
I1MACH(8) = S, the number of base-A digits
I1MACH(9) = A**S-1, the largest magnitude
SIGN*(B**E)*((X(1)/B+...+(X(T)/B**T))in which 0 .LT. X(1), and EMIN .LE. E .LE. EMAX.
I1MACH(10) = B, the baseSingle-precision constants
I1MACH(11) = T, the number of base-B digitsDouble-precision constants
I1MACH(12) = EMIN, the smallest exponent E
I1MACH(13) = EMAX, the largest exponent E
I1MACH(14) = T, the number of base-B digitsFUNCTION R1MACH(I)
I1MACH(15) = EMIN, the smallest exponent E
I1MACH(16) = EMAX, the largest exponent E
This function sets five single-precision machine constants:
R1MACH(1) = B**(EMIN-1), the smallest positive magnitudeFUNCTION ISHIFT(IWORD,N)
R1MACH(2) = B**EMAX*(1-B**(-T)), the largest magnitude
R1MACH(3) = B**(-T), the smallest relative spacing
R1MACH(4) = B**(1-T), the largest relative spacing
R1MACH(5) = LOG10(B)
IWORD is shifted by N bits. If N > 0, a left circular shift is performed (all bits are shifted left N bits, and the bits that are shifted out of the word to the left are shifted back into the word at the right). If N < 0, a right end-off shift is performed (all bits are shifted right by N bits, and the bits that are shifted out of the right of the word are lost)-if the leftmost bit is 0, then the vacated positions are filled with zeros; if the leftmost bit is 1, then the vacated positions are undefined. The implementor may assume that IABS(N) .LE. word_length.
FUNCTION IAND(K1,K2)
The bit-by-bit logical product of K1 and K2. If K3 = IAND(K1,K2), then the nth bit of K3 is 0 if the nth bit of either K1 or K2 is 0; otherwise the nth bit of K3 is 1. FUNCTION IOR(K1,K2) The bit-by-bit logical sum of K1 and K2. If K3 = IOR(K1,K2), then the nth bit of K3 is 0 if and only if the nth bit of both K1 and K2 is 0.
SUBROUTINE G01MIO(IOP,IUNIT,FNAME,IBUFF,LENGTH,IERROR)
This output routine is the central one for the metafile generator. A Fortran implementation of this subroutine is in the directory:
$NCARG/ncarg2d/src/libncarg_gks/bwiInput arguments
This subroutine is used to unpack bit chunks from NPACK into the ISAM array. A portable Fortran version of this routine is distributed, but the Fortran version is inefficient and should be replaced with a more efficient implementation.
CALL GBYTES(NPB,ISB,3,6,9,2)In this call, three bits would be skipped at the beginning of NPB; the next six bits would be unpacked into ISB(1) and right-justified with zero-fill; nine bits would be skipped in NPB, and then the next six bits of NPB would be unpacked into ISB(2) and right-justified with zero-fill.
SUBROUTINE SBYTES(NPACK,ISAM,IBIT,NBITS,NSKIP,ITER)
This subroutine is the reverse of GBYTES as described above. NPACK-Address of first word of array to be packed. ISAM-Array to be packed into NPACK. The rightmost NBITS bits of each word will be packed. ISAM should be dimensioned for at least ITER. IBIT-A bit-count offset to be used before the first bits are packed into NPACK. For example, if IBIT=3, and NBITS=5, 3 bits in NPACK will be skipped before the rightmost 5 bits of ISAM(1) are packed into it. NBITS-The number of bits in each word of ISAM to be unpacked. An error condition occurs if NBITS exceeds the word size on the machine. NSKIP-The number of bits to skip between each bit chunk packed. ITER-The number of bit chunks to be packed.
For example:
CALL SBYTES(NPC,ISB,45,6,3,2)In this call, 45 bits would be skipped at the beginning of NPC; the rightmost 6 bits of ISB(1) would be packed into NPC; 3 bits would be skipped in NPC, and the rightmost 6 bits of ISB(2) would be packed into NPC.